publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2021

  1. Multitask Recalibrated Aggregation Network for Medical Code Prediction
    Sun, Wei, Ji, Shaoxiong, Cambria, Erik, and Marttinen, Pekka
    In Proceedings of ECML-PKDD 2021
  2. Medical code assignment with gated convolution and note-code interaction
    Ji, Shaoxiong, Pan, Shirui, and Marttinen, Pekka
    In Findings of ACL-IJCNLP 2021
  3. Parallel Gaussian process surrogate Bayesian inference with noisy likelihood evaluations
    Järvenpää, Marko, Gutmann, Michael U, Vehtari, Aki, and Marttinen, Pekka
    Bayesian Analysis 2021
  4. A survey on knowledge graphs: Representation, acquisition, and applications
    Ji, Shaoxiong, Pan, Shirui, Cambria, Erik, Marttinen, Pekka, and Philip, S Yu
    IEEE Transactions on Neural Networks and Learning Systems 2021

2020

  1. Dilated convolutional attention network for medical code assignment from clinical text
    Ji, Shaoxiong, Cambria, Erik, and Marttinen, Pekka
    In Proceedings of ClinicalNLP@EMNLP 2020
  2. Batch simulations and uncertainty quantification in Gaussian process surrogate approximate Bayesian computation
    Jarvenpaa, Marko, Vehtari, Aki, and Marttinen, Pekka
    In Conference on Uncertainty in Artificial Intelligence 2020
  3. Errors-in-variables modeling of personalized treatment-response trajectories
    Zhang, Guangyi, Ashrafi, Reza A, Juuti, Anne, Pietiläinen, Kirsi, and Marttinen, Pekka
    IEEE journal of biomedical and health informatics 2020
  4. Predicting utilization of healthcare services from individual disease trajectories using RNNs with multi-headed attention
    Kumar, Yogesh, Salo, Henri, Nieminen, Tuomo, Vepsalainen, Kristian, Kulathinal, Sangita, and Marttinen, Pekka
    In Proceedings of the Machine Learning for Health NeurIPS Workshop 2020
    PDF
  5. Plasmids shaped the recent emergence of the major nosocomial pathogen Enterococcus faecium
    Arredondo-Alonso, Sergio, Top, Janetta, McNally, Alan, Puranen, Santeri, Pesonen, Maiju, Pensar, Johan, Marttinen, Pekka, Braat, Johanna C, Rogers, MRC, Schaik, Willem, and others,
    MBio 2020

2019

  1. Learning global pairwise interactions with Bayesian neural networks
    Cui, Tianyu, Marttinen, Pekka, and Kaski, Samuel
    arXiv preprint arXiv:1901.08361 2019

2018

    2017

      2016

        2015